Protein Info for PGA1_c20580 in Phaeobacter inhibens DSM 17395

Annotation: putative protein QmcA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 49 to 66 (18 residues), see Phobius details PF01145: Band_7" amino acids 33 to 204 (172 residues), 124.1 bits, see alignment E=3.4e-40

Best Hits

KEGG orthology group: None (inferred from 83% identity to sil:SPO2617)

Predicted SEED Role

"Putative stomatin/prohibitin-family membrane protease subunit YbbK" in subsystem YbbK

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ENA4 at UniProt or InterPro

Protein Sequence (297 amino acids)

>PGA1_c20580 putative protein QmcA (Phaeobacter inhibens DSM 17395)
MSEELLLSLLTQNIIYILGAIFLMILIFKGIRIVPQSEKYVVERFGRLHAVLGPGINFIV
PLLDAVAHKVSILERQLPNASQDAITKDNVLVQIDTSVFYRILEPEKTVYRIRDVDGAIA
TTVAGIVRAEIGKMDLDEVQSNRSQLIGQIQHLVESAVDDWGIEVTRAEILDVNLDQATR
DAMLQQLNAERARRAQVTEAEGQKRAVELNADAELYAAEQIAKARRIQADAEAYATQVVA
KAISDHGIEAAQYQVALKQVEALNALGAGEGKQTILVPANAIEAFGNAFNMLKGTGR