Protein Info for Psest_2042 in Pseudomonas stutzeri RCH2

Annotation: PQQ-dependent catabolism-associated beta-propeller protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF21783: YNCE" amino acids 8 to 320 (313 residues), 64.2 bits, see alignment E=3.4e-21 TIGR03866: PQQ-dependent catabolism-associated beta-propeller protein" amino acids 16 to 323 (308 residues), 554.3 bits, see alignment E=6.6e-171 PF10282: Lactonase" amino acids 25 to 82 (58 residues), 26.2 bits, see alignment E=1.2e-09 amino acids 182 to 301 (120 residues), 31.2 bits, see alignment E=3.5e-11 PF02239: Cytochrom_D1" amino acids 72 to 174 (103 residues), 30 bits, see alignment E=5.2e-11 TIGR02276: 40-residue YVTN family beta-propeller repeat" amino acids 105 to 146 (42 residues), 29.8 bits, see alignment 4.6e-11 amino acids 281 to 322 (42 residues), 51.3 bits, see alignment 8.8e-18

Best Hits

KEGG orthology group: None (inferred from 97% identity to psa:PST_2283)

Predicted SEED Role

"outer membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKR5 at UniProt or InterPro

Protein Sequence (323 amino acids)

>Psest_2042 PQQ-dependent catabolism-associated beta-propeller protein (Pseudomonas stutzeri RCH2)
MPRTALATAIALAFSLAAGSAAAATAYVSNEKDDSISVIDLDKMETVETLQVGMRPRGLT
LSHDNKLLYICASDSDTVQVMDLATRQIIKQLPSGADPEQFALHPNNKWLYISNEDDALV
TVVDVDKEEVLAQIDVGVEPEGMAVSPDGKWAVNTSETTNMLHWIDTSTNELVDNTLVDQ
RPRHVEFTNDSKLLWASAEIGGTVSVVDVDKREILKTLTFKIKGVHPDKVQPVGIKLSSD
GKYAFVALGPANHIAVVDAKTYEVLDYLLVGRRVWHMAFNPDESLLLTTNGVSGDVSVID
VAKLKVTKSIKVGRYPWGVVVTP