Protein Info for PGA1_c20160 in Phaeobacter inhibens DSM 17395

Annotation: TRAP transporter, subunit DctM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 785 transmembrane" amino acids 7 to 55 (49 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 163 to 193 (31 residues), see Phobius details amino acids 205 to 230 (26 residues), see Phobius details amino acids 268 to 292 (25 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details amino acids 417 to 439 (23 residues), see Phobius details amino acids 451 to 470 (20 residues), see Phobius details amino acids 476 to 493 (18 residues), see Phobius details amino acids 505 to 525 (21 residues), see Phobius details amino acids 531 to 547 (17 residues), see Phobius details amino acids 559 to 579 (21 residues), see Phobius details amino acids 592 to 617 (26 residues), see Phobius details amino acids 632 to 653 (22 residues), see Phobius details amino acids 673 to 701 (29 residues), see Phobius details amino acids 713 to 738 (26 residues), see Phobius details amino acids 758 to 782 (25 residues), see Phobius details PF06808: DctM" amino acids 18 to 232 (215 residues), 95.5 bits, see alignment E=1.7e-31 amino acids 581 to 774 (194 residues), 87 bits, see alignment E=6.4e-29

Best Hits

KEGG orthology group: None (inferred from 85% identity to sit:TM1040_0880)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F0D4 at UniProt or InterPro

Protein Sequence (785 amino acids)

>PGA1_c20160 TRAP transporter, subunit DctM (Phaeobacter inhibens DSM 17395)
MLFGLDGVEIGLIIVFFCLFGGILSGFPVAFAIGGAGVISFGIIAALDSAGILVHQAIDT
SSQVYRDLVNSGVKPDSVSVFRYPDLPRVAEAVFPQGWEVAMDRNISFIVNRMNERVLAG
ASIETLLAVLMFVLMGITLERSKIANDLLTTMARVFGPLPGGLAVSIVVVGAFLAASTGI
VGATVVTMGLLALPTMLRNNYSPELATGVIAASGTLGQIIPPSIVIVLLGTLAGDLYSTA
QEARAQEFGCSDALTYLGEPAVVSVGTLFQAALLPGIMLALLYALYAFGYALLNPEKAPA
VVLEGGTGEPITRGEGLTWFLGVPVALIAGAMLLGQVNLIGSQNVNVSAFSDAGQTAALR
TNVGDQCKAAMIDLHGQEAWDAAVTEQDAIDAAGGVTQATKLTEEELEAAKIAKIDAAAP
IGTGLTVLMVLMGLVLAVGRGVSPSSDPKPLILGAIGVLLIALVDVVAIAPTTSPGITVL
LIALPTLLALYGCRIAAGRSARNDLIRVVFPPLILIVAVLGSILGGITNPTPAAALGAGG
AIMLAAYRKLQDQGKSGKIIIWATFAVAICILVGVNFDLRINGRSGVSAETVIAFGVAYG
AYLFALFGLLYGCWVLFKGGVLTPVVRETAKVTSMVFTILIGSQLLNLVVISFGGEHYIQ
QFLKSFDSELKVFLIVMVVLFILGFVLDFLEIIYIVIPIVGPVIYGGSFDPKWVTIMVAV
NLQTSFLTPPFGFALFYLRGVAPKEVTTAHIYRGVLPFVLIQVVGLGILWMFPSIVTIVP
ALMPN