Protein Info for Psest_1938 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 407 to 428 (22 residues), see Phobius details PF13584: BatD" amino acids 24 to 116 (93 residues), 45.8 bits, see alignment E=4e-16

Best Hits

KEGG orthology group: None (inferred from 90% identity to psa:PST_2399)

Predicted SEED Role

"BatD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GL34 at UniProt or InterPro

Protein Sequence (542 amino acids)

>Psest_1938 hypothetical protein (Pseudomonas stutzeri RCH2)
MTRLMAFLLLSILAGQAAAAGLFARVDRTQLSIDETLELSLESQGGAVFGKPDLQPLDDL
FEVFDTRQVNQLSSSNGEARAITRWLITLRPKQTGYVIIPPLQLGDWRSEPITLLVQESL
KSSDGDQLAPIFIDASVDQESVYVQAQVILTLRIYHSVSLYDDSTLSPLQMPEALVERLG
EPRTYEKTINGIRHGVIEVRYALFPQKSGELTIPAQLFSATTVTGGSNPLFGSRSGRSTQ
VRSPSIPLTVKAKPADYPADAPWLPARSLTLVEAWSPEPDQAQAGESLTRSLLLKAEGLT
STQLPAIGSAQSAELRRYPDQPSLANEVGATGLIGSREQREALIPTRSGTLQLPALEVVW
WNTVEDRLERTTLDKRTLSVADNPNLVQPAAEQPVAIPAPVEQQLLWPWQLSTAFFALST
LVGFGLWTRARRQPAVLRALQPGPTPRSLLDDLRRACQANDSHATRQALDAWARQQPETL
ADMAARFVPLSDALDGLNGALYSEAGQRWQGDALWQAIQALPPAITPSIEQDQSALPPLY
PR