Protein Info for PGA1_c18490 in Phaeobacter inhibens DSM 17395

Annotation: Predicted ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 288 to 306 (19 residues), see Phobius details PF13175: AAA_15" amino acids 1 to 45 (45 residues), 35.6 bits, see alignment 1.3e-12 PF13476: AAA_23" amino acids 4 to 47 (44 residues), 36.6 bits, see alignment 1.1e-12 PF13304: AAA_21" amino acids 23 to 363 (341 residues), 71.4 bits, see alignment E=1.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DR49 at UniProt or InterPro

Protein Sequence (428 amino acids)

>PGA1_c18490 Predicted ATPase (Phaeobacter inhibens DSM 17395)
MLRKLKINRFKSIRSENLDFGRVNLFIGGNGSGKSNILEAIGVASASLHRGLSETAFSEK
GIRLTPSELMKSAHKNVEIPSTLELDCEFECDVRYKCNLTSREGDLNLRFHSESCEYSGG
KAFGRSGNGQTVFGNSTYSRLDASRGMWDQVKVAYDFPDEVRQELDRFATYAIFTPQADV
LRGVIGGDAISEGPIGLHGEGLPAAVLALLRNYQTPQFEFPESKEKQKLLKHLSGQAADL
AFLPGWTNKVRVGQLDEKLAPRRVAHASNEMVYFIDRYMKEGRNTLSAYDSSEGTLFLLF
VAVLLAHPDAPKHFGLDNIDNALNPRLTRELIENIIEITEEYQDFEVGPKQIFMTSHNPT
SLDAFDLFDENLRVFVVARDDRGYTKATRLKPADGMSREEWDEAKGGRNLSQLWLDDLID
GANGYSEI