Protein Info for Psest_0180 in Pseudomonas stutzeri RCH2

Annotation: ABC-type Fe3+ transport system, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 538 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 54 to 77 (24 residues), see Phobius details amino acids 89 to 112 (24 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 192 to 214 (23 residues), see Phobius details amino acids 227 to 252 (26 residues), see Phobius details amino acids 281 to 307 (27 residues), see Phobius details amino acids 323 to 347 (25 residues), see Phobius details amino acids 359 to 384 (26 residues), see Phobius details amino acids 404 to 428 (25 residues), see Phobius details amino acids 453 to 475 (23 residues), see Phobius details amino acids 511 to 530 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 69 to 251 (183 residues), 51.8 bits, see alignment E=4.3e-18

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 95% identity to psa:PST_4065)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GFI4 at UniProt or InterPro

Protein Sequence (538 amino acids)

>Psest_0180 ABC-type Fe3+ transport system, permease component (Pseudomonas stutzeri RCH2)
MSHPVERRWYPITFAVAALVLLPLSILLFSWSSIDTEIWSHLWDTQMPRLLGNTLTLLLW
VGVGVVVLGVSLAWLTALCEFPGRRWLDWALMLPFAIPAYVLAFVFIGLLDFAGPVQSLA
REWFGSGIRFPRVRSTGGVITVLVLVFYPYVYLLARSAFLAQGKGLMEAARVLGQSPWQA
FWRVALPMARPAVGAGLALAMMETLADFGAVSVFNFDTFTTAIYKTWYGFFSLTSATQLA
SLLLLAVMLVLYGERRARGAARPANERARSAALYRLTGVKAFAASAWCGLVFLCAFVIPL
LQLLAWLWQRGRFDLDERYAGLILHTLYLGGIAALIVVTVALLLAFARRQAPVRSIRSAV
GLANLGYALPGSVLAVSIMLAFSYLDQNLVMPLSSWLGGAGKPILLGSLGALLLAYLIRF
MAVAFGPLENALVRIRPSLPQASRSLGVGGPALFFRVYLPLLLPGTLSAALLVFVDVLKE
MPATLLMRPFGWDTLAVRIFEMTSEGEWARASLPALTLVLVGLLPVVLLIRRSARRIG