Protein Info for Psest_1792 in Pseudomonas stutzeri RCH2

Annotation: RND family efflux transporter, MFP subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details PF16576: HlyD_D23" amino acids 59 to 317 (259 residues), 82.3 bits, see alignment E=4.7e-27 PF13533: Biotin_lipoyl_2" amino acids 73 to 119 (47 residues), 31.4 bits, see alignment 1.9e-11 TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 127 to 395 (269 residues), 129.6 bits, see alignment E=6.2e-42 PF13437: HlyD_3" amino acids 214 to 310 (97 residues), 53.6 bits, see alignment E=4.8e-18

Best Hits

KEGG orthology group: K02005, HlyD family secretion protein (inferred from 86% identity to psa:PST_2519)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLY2 at UniProt or InterPro

Protein Sequence (406 amino acids)

>Psest_1792 RND family efflux transporter, MFP subunit (Pseudomonas stutzeri RCH2)
MALKGRIQEWSVVPAAKSIRRTLPLLLALVLLAAWFIWRQLQGPELPGYRLETRPLVQRV
VASGEVDSQSLAQVGSEITGVISARHVREGDAVAAGDLLLELRDDEQRARLREAEAALQQ
LIDSTRPQAQATLREAQHNLEQASRELKRRETLFERKLLASEPLEQARRAELTARVIRDR
ARFAAAALAEGGSEEQVLRQRLEAARATLAKTRIHAQVDGIVQTRDAEPGDLVQPGRTLL
AIARSGSNEILLPLDEKNLAPIELGQAAKIIADAYPERVMPARVSFIAPSVDTSRGTIDV
HLDLEQPADFLRQGMTVSVNIETGRRKQALVLPNDALRARDGMRAQVLRVRAGVVERVNV
RLGLLGTALSEVVEGLATGDLVLIGDAEEGQRVRVQEQPIPHGIQD