Protein Info for PGA1_c17330 in Phaeobacter inhibens DSM 17395

Annotation: Predicted O-linked N-acetylglucosamine transferase, SPINDLY family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 PF13844: Glyco_transf_41" amino acids 142 to 365 (224 residues), 142.7 bits, see alignment E=2.4e-45 amino acids 373 to 557 (185 residues), 182 bits, see alignment E=3.1e-57

Best Hits

Predicted SEED Role

"FIG01031213: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EMF0 at UniProt or InterPro

Protein Sequence (585 amino acids)

>PGA1_c17330 Predicted O-linked N-acetylglucosamine transferase, SPINDLY family (Phaeobacter inhibens DSM 17395)
MNKPLRTKHLSKSARRKLEAEAQSPAVFLKAEAGQAFIEGDYQRARELTMQALVFEPENA
TLHAEIASSFMQEKKYELALKHLMGALKLEPTSPKWLSAIGTILFLMDKLSDAVGFFEAV
YQLDPENAMNVSRLVQSQMNLCDWAVYQDQKNKLRILDNDPANGDPFTTLLYVDDGAFQK
KRVVMKTKKKATISEQKVARKFDRTPVADRKIRVGYFSCDFFNHATMFLMARHFELHDRD
KFEIYIYDYSEEPDNVMRQRVLRSADCYRQIQGVKDEDVAELARADGLDIAIDLKGYTKH
ARPAIFGFRAAPVQISYLGYPGTTGMPTMDYFLADPVTVPKEGRRHFSEKILYMPNCYQV
NDNSRAHPEEKPTRADMGLPENAVVFCSFNNHNKVTPAEFDIWMDLLKDVDNSVLWFLAA
ADVVRANILKEAEARGVPADRIVFAGRCSTPDHVARLPLADIFLDTFACNAHTTASEMLW
SGVPVVTKPGEQFAARVAASIVTAVGCPELIAETDEEYRALALRLATQPEERQALREKLK
ANIPSTPLYDTEQYVRDFEALMEKAIQRYDDGLKPDHLSLAEGKV