Protein Info for PGA1_c16630 in Phaeobacter inhibens DSM 17395

Annotation: PAP2 superfamily.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 transmembrane" amino acids 342 to 350 (9 residues), see Phobius details

Best Hits

Predicted SEED Role

"FIG00919167: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EX34 at UniProt or InterPro

Protein Sequence (481 amino acids)

>PGA1_c16630 PAP2 superfamily. (Phaeobacter inhibens DSM 17395)
MMAEHGSSQGASNGLGLGLGLGLGNGLGLGNGLGLGNGLGLGNGLGTGQGLGLGLGLGSG
LGLGLGSGLGLGNGLGLGSGLGLGLEDNGYLLGNGADAGIGTLRSYYATPKELGLLPWTL
DFSPDNNGGDPFPLSMIISPYQLPTDTAAYPVALEWTTEDWDPALRFWSLPFDPNLGEWL
RAADRSEPGTMAALEFASQFNNWHPAHVGNRWLEDKDLLWQYVRTGTAAQSRTAAEAAFD
IIVAELEVLKMYMEDDRQQYMVECDIQADGLPAYLIHFLGANSFDHPFTLKLIDLGLAVG
NVAYMSYKAYFKRVRPSILRPGLTVPFGPPAHPAFPSGHAFLAHFLSLLLLEIPGVAQRF
GVVKGYKSDGSGTDVQIPAGTLLRKPTYSDLLGSDVIASPLLTMANRIAVNRERIGVHYS
SDSTAGRHIAAGIWYCLMDSAPVNPAAGGTPWAHIAVPTLHRILEKAKTEWPTPWVSADI
T