Protein Info for Psest_1673 in Pseudomonas stutzeri RCH2

Annotation: Biopolymer transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details PF02472: ExbD" amino acids 7 to 136 (130 residues), 103.9 bits, see alignment E=3.5e-34

Best Hits

KEGG orthology group: K03559, biopolymer transport protein ExbD (inferred from 96% identity to psa:PST_2637)

Predicted SEED Role

"Biopolymer transport protein ExbD/TolR" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHK4 at UniProt or InterPro

Protein Sequence (142 amino acids)

>Psest_1673 Biopolymer transport protein (Pseudomonas stutzeri RCH2)
MKFRRKPRENVEIGLAPLIDVVFILLLFFVVTTTFTRETQLKVDLPEAASGTPPQDAEVR
QLEVLIDVAGNYSLNGKALLKNDLNSLMAALSKESGGDNRMPMIISADGKTPHQAVITAM
DAAGKLGFGQLRITTVEAQASP