Protein Info for Psest_1670 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 transmembrane" amino acids 46 to 71 (26 residues), see Phobius details amino acids 77 to 83 (7 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details PF09835: DUF2062" amino acids 22 to 164 (143 residues), 175.2 bits, see alignment E=4e-56

Best Hits

KEGG orthology group: K09928, hypothetical protein (inferred from 92% identity to psa:PST_2640)

Predicted SEED Role

"FIG00954461: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GLF0 at UniProt or InterPro

Protein Sequence (171 amino acids)

>Psest_1670 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MPRRFFKRYMPHPDRIKTNKSLRFLGALIHDPNLWHLNRHSVARAMAIGLFWAMIPMPLQ
MLAAALCALPARANLPIAVGLVWLTNPLTMPPVFYCNYKVGTWLLDTPANNMPAELSLAW
VRHMLEHNWQPLYLGSLVTGIILAILGYAFTQAYWRWWVGRSWRRRQNGRR