Protein Info for Psest_1613 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 53 to 74 (22 residues), see Phobius details amino acids 100 to 124 (25 residues), see Phobius details amino acids 131 to 149 (19 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details PF12730: ABC2_membrane_4" amino acids 23 to 176 (154 residues), 28.5 bits, see alignment E=3e-10 PF13346: ABC2_membrane_5" amino acids 55 to 176 (122 residues), 31 bits, see alignment E=3.7e-11 PF12698: ABC2_membrane_3" amino acids 58 to 234 (177 residues), 32.4 bits, see alignment E=1.1e-11 PF12679: ABC2_membrane_2" amino acids 66 to 177 (112 residues), 42.2 bits, see alignment E=1.2e-14

Best Hits

KEGG orthology group: K01992, ABC-2 type transport system permease protein (inferred from 99% identity to psa:PST_2695)

Predicted SEED Role

"gliding motility protein GldF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHF1 at UniProt or InterPro

Protein Sequence (243 amino acids)

>Psest_1613 hypothetical protein (Pseudomonas stutzeri RCH2)
MTQLPVIFKRELGSYFATPLAYVFIVIFLVLSGVFTFYLGGFYERGQADLTPFFSFHTWL
YLFLVPAIAMRLWAEERKSGSIELLMTLPITRFEAVGGKFLAAWVFAGIALLLTFPMVIT
VNYLGEPDNGVIVAGYLGSWLLAGAFLAIGSCMSALAKNQVIAFILSVAVCFLFIVSGLP
MVLDALAWAPQWLIDAVASLSFLIRFDSISKGVIDLRDLLYFVTLIVAWLAATAVVVDLK
KAA