Protein Info for PGA1_c15880 in Phaeobacter inhibens DSM 17395

Annotation: soluble aldose sugar dehydrogenase YliI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF07995: GSDH" amino acids 42 to 364 (323 residues), 408.4 bits, see alignment E=1.3e-126

Best Hits

KEGG orthology group: None (inferred from 60% identity to sit:TM1040_1271)

Predicted SEED Role

"PQQ-dependent oxidoreductase, gdhB family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EZC6 at UniProt or InterPro

Protein Sequence (367 amino acids)

>PGA1_c15880 soluble aldose sugar dehydrogenase YliI (Phaeobacter inhibens DSM 17395)
MSWLAKFTSGAALLLTLATGASAEALTSSQGALRIEKMVQGLDIPWGFDFLPDGSVLISE
RAGNLLLLRDGRLTRIKGTPKVSDQGQGGLLDVMVPRTFAKTRRIYLTYAKRVGRGSATA
VATGQLARRNTQLQGLRDIFVAAPAVSSGRHFGSRLAEGPDGHIYVTLGDRGDRQSAQVL
ASHQGSILRLTPEGSAPRSNPLTKRRGAQPEIWSYGHRNPQGLTFAADGSLWSVEHGARG
GDEVNRIEKGANYGWPIISYGRHYSGLTIGEGTEKPGLKQPQYYWDPSIAPSNLLVYSGK
MWPDWRGDIFVGSLKFDYIARLSGSPLKEVEQVKGEQTGRIRDLREAPDGSIWFASETDG
AIYRLSR