Protein Info for Psest_1587 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 69 to 150 (82 residues), 55.1 bits, see alignment E=3.8e-19

Best Hits

KEGG orthology group: None (inferred from 59% identity to pmk:MDS_2506)

Predicted SEED Role

"Cytochrome c family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GK24 at UniProt or InterPro

Protein Sequence (232 amino acids)

>Psest_1587 hypothetical protein (Pseudomonas stutzeri RCH2)
MTTTIKTLALTGAVLAVAGAGVLYSGIINVAADEPHSQVVESLLEITRDRSIAVRARDIE
VPSLEDDALIRSGAGNYHAMCIGCHLAPEMGSTELSQSLYPAPPNLAERGTGGDPAATFW
VIKHGIKASGMPAWGKSMSDDYIWGMVAFIERLPQLDAAQYRSLVASSDGHQHGGGESDM
HDHSGQHSAPGMPQGSASAGDDHHGAHDDHAPKQPEAQDNVHHHPDGSRHVH