Protein Info for PGA1_c15550 in Phaeobacter inhibens DSM 17395

Annotation: Putative hemolysin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 PF13444: Acetyltransf_5" amino acids 25 to 128 (104 residues), 113.7 bits, see alignment E=3.1e-37

Best Hits

KEGG orthology group: None (inferred from 68% identity to sit:TM1040_1208)

Predicted SEED Role

"Mlr3216 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E0Q2 at UniProt or InterPro

Protein Sequence (253 amino acids)

>PGA1_c15550 Putative hemolysin (Phaeobacter inhibens DSM 17395)
MGGSSPAFQVKLAQTSADLRAAQALRYEVFVIELGGGGALVDHDVRLERDHFDAYCDHLL
LWDLERDRVVGVYRLLRGDQALRAGHFYSEGEYDLSKLTASGRRLLELGRSCLHPDYRGG
TAMFHLWSALADYVAEHDIEILFGVASFHGTEITPLANALSMLYHNHLAPEAVRPIAREY
QSMDLIAVDDLNRRQAMLDTPALIKAYLRLGGCVGEGAFVDHEFNTTDVCLVLDTARMNA
RQKRIYGAGRSTT