Protein Info for Psest_1476 in Pseudomonas stutzeri RCH2

Annotation: Predicted permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 58 to 81 (24 residues), see Phobius details amino acids 127 to 145 (19 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 212 to 267 (56 residues), see Phobius details amino acids 273 to 297 (25 residues), see Phobius details amino acids 307 to 338 (32 residues), see Phobius details PF01594: AI-2E_transport" amino acids 13 to 340 (328 residues), 191.6 bits, see alignment E=1.1e-60

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_2829)

Predicted SEED Role

"Putative permease often clustered with de novo purine synthesis" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKX5 at UniProt or InterPro

Protein Sequence (365 amino acids)

>Psest_1476 Predicted permease (Pseudomonas stutzeri RCH2)
MTMNDSNRWLGLAGLLLCAWLVYLLTPILTPFLIGILLAYLGDPLVDRLERWGLSRTWGV
IAVFALFSLLMLLMLLVLLPMLGKQLVRLYQLAPLTLDWLQHQALPWVQLQFGLEENFWR
LDQLKAAFSAHLGSTTDVLGIILSRATASSLALLAWIGNLLLIPVVSFYLLRDWDLIMLK
LRSLLPRKREGMVVRLMSECHEVIGAFLRGQLLVMLALAIIYASGLMLVGLELGLLIGVL
AGLASIVPYMGFVVGIGAAVVAVLFQFGLAPYPLLGVAAVFTVGQMLEGMLLTPLLVGDR
IGLHPVAVIFAVLAGGQLFGFTGVLLALPVAAVIMVLLRHVHDLYKLSDLYAEPAGAPAE
PPSQP