Protein Info for PGA1_c14290 in Phaeobacter inhibens DSM 17395

Annotation: putative outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF03938: OmpH" amino acids 63 to 198 (136 residues), 42.9 bits, see alignment E=2.8e-15

Best Hits

KEGG orthology group: None (inferred from 58% identity to sit:TM1040_1406)

Predicted SEED Role

"Outer membrane protein H precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EWH1 at UniProt or InterPro

Protein Sequence (216 amino acids)

>PGA1_c14290 putative outer membrane protein (Phaeobacter inhibens DSM 17395)
MTQAVDTRHRGALAGWLAPFLCALAVLPLMIQPGAAQETTVPAAGFPIGETLQLGAPQTG
LLTIHSERLYAESAFGQRVTQELDAEGAVLTAENRKIEAELRAEELDLTERRSSMDPEAF
RALADAFDKKVQETRRNQDQKLRGINQIGEDARRDFFTASLPVLQQIMLEAGAGAILEHA
SVFLSADAADVTDLAIARVNEVLGDGRDSQAEADSE