Protein Info for PGA1_c14160 in Phaeobacter inhibens DSM 17395

Annotation: putative glutathione transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 92 to 93 (2 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 208 to 231 (24 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 276 to 293 (18 residues), see Phobius details amino acids 305 to 323 (19 residues), see Phobius details amino acids 343 to 363 (21 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details amino acids 451 to 470 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 226 to 473 (248 residues), 57 bits, see alignment E=1.1e-19

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 76% identity to sit:TM1040_1419)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E072 at UniProt or InterPro

Protein Sequence (480 amino acids)

>PGA1_c14160 putative glutathione transport system permease protein (Phaeobacter inhibens DSM 17395)
MDPLSWTGSLSFLTPVLLLALGALAASVMTWLVLSIVTTSPTMAVNAHHSASLAATPDAL
AGIAVRYSFLAVVGLILIYIVFGIVFGASGGIVGAMAQLLLPVWVALVVLFAVSITFKRR
LGLYGKLFDSPIGMIGFALVMFWVFTGVLGAMDLIAPHDPLAQISGLKNKLPGTPLPGAE
ADAGIAAWYLLGGDNLARDVFSRLIDGAWVVVQIAPLATLFAFMVGITLGLPAGYYGGLW
DTVLSFMANLILAFPVILLFYLLVTPEIVETGLPQYIAVVLFAFPLIFIGVLIHSRFRTR
PQHNAMWLALVLIPGAILYLSLINESGSKITFSPIDLFNVPGGILVVFVSVVFVNSPTVF
RIVRGLTMDIKTRDYVAAAQTRGERPWYIMLWEILPNARGPLIVDFCLRIGYTTILLGTL
GFFGLGLPPESPDWGSTINDGRKLLSIYLHPPLPPALALLSLVLGLNLLADGLREESLRD