Protein Info for PGA1_c14050 in Phaeobacter inhibens DSM 17395

Annotation: inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 130 to 156 (27 residues), see Phobius details PF01595: CNNM" amino acids 19 to 196 (178 residues), 167.7 bits, see alignment E=3.2e-53 PF00571: CBS" amino acids 212 to 269 (58 residues), 23.2 bits, see alignment E=1e-08 amino acids 292 to 342 (51 residues), 41.3 bits, see alignment 2.4e-14 PF03471: CorC_HlyC" amino acids 359 to 434 (76 residues), 78.4 bits, see alignment E=5.1e-26

Best Hits

KEGG orthology group: None (inferred from 82% identity to sit:TM1040_1427)

Predicted SEED Role

"Co2 transporter containing CBS domains"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ELJ9 at UniProt or InterPro

Protein Sequence (436 amino acids)

>PGA1_c14050 inner membrane protein (Phaeobacter inhibens DSM 17395)
MDSTTTFVDSTFWTTAGAIVFLLVLSGCFSGSETALTAASRGKLRTQADKGSNGAKRALA
ITEDSERLIGSILLGNNLVNILATSLATALFTRALGESGVALATLVMTLLVLIFAEVLPK
TYAISNAEKAAAAVAPPIGVLVTVLAPVVGAVRLLVRGVLRIFGVRIDPDSHIMAVREEI
AGALHLGHSEGVVQKEDRDRILGALDLSDRFVEEIMLHRSNIEMVDANLDPQRILEQCLT
SPHTRLPVFKDEPENIIGVLHAKDLLREMYAQIGGPDGDASLLRNFNITSVTKPPYFVPE
TTTLDDQMRQFLRARTHFALVVDEYGTLQGLITLEDILEEIVGEITDEFDPDEETVVKKT
SDGNYLVDGATTIRDLNRATDWSLPDDEANTIAGLVIHEAQTIPIVGQVFSFHNFRFEVT
AREGNRVTELKIRPLH