Protein Info for Psest_1418 in Pseudomonas stutzeri RCH2

Annotation: Transposase and inactivated derivatives

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 PF05598: DUF772" amino acids 52 to 128 (77 residues), 93 bits, see alignment E=1.4e-30 PF01609: DDE_Tnp_1" amino acids 144 to 441 (298 residues), 51.5 bits, see alignment E=1.7e-17 PF13751: DDE_Tnp_1_6" amino acids 320 to 444 (125 residues), 64.8 bits, see alignment E=1.4e-21

Best Hits

KEGG orthology group: None (inferred from 71% identity to bgf:BC1003_0664)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJM9 at UniProt or InterPro

Protein Sequence (456 amino acids)

>Psest_1418 Transposase and inactivated derivatives (Pseudomonas stutzeri RCH2)
MMGQLPGGQQRLFYSFNLEDHVPAQHLLRSIDQCLDLSDLRAYLADFYSPIGRPSIDPEL
MVRMLVVGYCYGIRSERRLCEEVHLNLAYRWFCRLGLEDEVPNHSTFSKNRHGRFRDSDL
FRWLFNEVLRRCMAAGLVKGEGFAVDASIIKADASRQRGVVGDEVDWSDPKLSSRAVREY
LEALDEDALAEALPKKISLTDPQSRWTAAPGGPAFFAYSTNYLIDTEHGVIMDVEATPAH
RTTEVDSTRTMVERVEAQFDLTPERLIGDTAYGTAPMLAWMVEEKDIEPHVPVWDKTERK
DDSLSSNDFHWNQEADEYRCPTGKPLRSEWRAFTQKRSRVTKANTIIYRSSQTDCVTCPL
KAKCCPNTPNRKIVRSIHEAARDVARRIAKTPEYLVSRCERKKVEMLFAHLKRIMKLDRL
RLRGLTGATDEFTMAAMVQNLRRMAKLLPQGPPLTG