Protein Info for Psest_1390 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized ABC-type transport system, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 42 to 58 (17 residues), see Phobius details amino acids 64 to 85 (22 residues), see Phobius details amino acids 93 to 113 (21 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 219 to 236 (18 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 13 to 281 (269 residues), 119.5 bits, see alignment E=7.4e-39

Best Hits

Swiss-Prot: 44% identical to TSGCD_HALVD: Putative glucose ABC transporter permease protein TsgC13 (tsgC13) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 99% identity to psa:PST_2909)

Predicted SEED Role

"Nucleoside ABC transporter, permease protein 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIX9 at UniProt or InterPro

Protein Sequence (308 amino acids)

>Psest_1390 Uncharacterized ABC-type transport system, permease component (Pseudomonas stutzeri RCH2)
MDMDLLTNIFYAMIRTGTPLLLVALGELVCEKSGVLNLGQEGMMLFGAVIGFIVAFASGN
LWLGVLFACLAGVLLSLLFAMVALGFNANQVATGLALTIFGVGLSSFVGASWVGKPLAGF
EPIAIPLLSEIPVIGRMLFAQDLLVYLSFGLFALVAWVLLKSRIGLIIQAVGENPNAASA
MGLPVLRVRTLAVMFGGAMAGLAGGYMSLAYTPMWAENMTAGRGWIALALVVFASWRVSR
VLLGAYLFGLASILHLVAQGLGLAIPGNLLAMLPYVATILVLVLLSRDAIRTRLYAPVSL
GQPWQPGH