Protein Info for Psest_1380 in Pseudomonas stutzeri RCH2

Annotation: Di- and tricarboxylate transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 615 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 28 to 45 (18 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 94 to 122 (29 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 173 to 197 (25 residues), see Phobius details amino acids 423 to 442 (20 residues), see Phobius details amino acids 447 to 467 (21 residues), see Phobius details amino acids 474 to 494 (21 residues), see Phobius details amino acids 514 to 542 (29 residues), see Phobius details amino acids 554 to 573 (20 residues), see Phobius details amino acids 593 to 613 (21 residues), see Phobius details PF03600: CitMHS" amino acids 16 to 562 (547 residues), 267.6 bits, see alignment E=2.4e-83 amino acids 513 to 610 (98 residues), 40.2 bits, see alignment E=3.6e-14 PF02080: TrkA_C" amino acids 219 to 289 (71 residues), 42.2 bits, see alignment E=9e-15 amino acids 335 to 400 (66 residues), 37.6 bits, see alignment E=2.5e-13 PF00939: Na_sulph_symp" amino acids 397 to 614 (218 residues), 34.4 bits, see alignment E=2e-12

Best Hits

KEGG orthology group: None (inferred from 93% identity to psa:PST_2915)

Predicted SEED Role

"TrkA-C domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJH0 at UniProt or InterPro

Protein Sequence (615 amino acids)

>Psest_1380 Di- and tricarboxylate transporters (Pseudomonas stutzeri RCH2)
MTGEQLIVFGVLAATLVLFVWNRWRYDLVALGALLACALTGVVPADEVFSGIGHPAVISV
AAVLVLSRGLLNAGVVDSVARRLMQVGDRPWAQVAALTGIVALSSGFMNNVGALALFMPV
AIWMSRQSGRSPSYLLMPLAFGSLLGGTLTLIGTPPNLIIAGYRAEAGEAPFGMFAFLPV
GAAVTVAGVLFIAVLGWRLVPRRQEQEGNGDLFEISAYLTEVRVPESCKYAGRTLHALIN
AVKDEADVQVIALVRGDERQRMPSTYEVLREGDILLVEADSDSLKALLDVTGVELAANVD
EHDEATQAEQLETEQAVEEERARKSHKSRHGELTLAEAIVSPRSMLVGTTASGLDLRERH
GVNVLAVARQGQRLRQRLGQIRFAAGDILLLQARENALQSSLNSLGCLPLASRGLSITTP
RNVLLASAIFAITLATIAFGLVPAATALVTGALVMILVGLIPLGGIYESIDMPVIVLVAA
MLPVGQALETSGGSQLIAEALLGLGQSLPPAGTLALLMVAVMLISNVVNNAAAAVLAAPV
AISLARGMDVSVDPFLMAVAIGASCAFLTPIGHQSNTLVMAPGGYRFGDYWRLGLPLSIL
VVLCAVPTILWIWPL