Protein Info for Psest_1355 in Pseudomonas stutzeri RCH2

Annotation: Predicted protease of the Abi (CAAX) family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 47 to 66 (20 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 117 to 141 (25 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 180 to 197 (18 residues), see Phobius details amino acids 202 to 220 (19 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details PF02517: Rce1-like" amino acids 148 to 238 (91 residues), 64.4 bits, see alignment E=4.9e-22

Best Hits

KEGG orthology group: K07052, (no description) (inferred from 75% identity to psa:PST_2938)

Predicted SEED Role

"CAAX amino terminal protease family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJE0 at UniProt or InterPro

Protein Sequence (249 amino acids)

>Psest_1355 Predicted protease of the Abi (CAAX) family (Pseudomonas stutzeri RCH2)
MRHALHYGTPLLALLAGLAAGLIDASAALATLAFAGWLTVQPRLPGPLWLIGALLGSLLL
AAHLLPGFTPLPIGPPQDLGGAAPWQLRISPDKAMVAALLLAWWLGQPRTAWRSIRLTLL
ASGACLILIPLLALVSGVLGWQPKWPALFLPWLLINLGITCLAEELIFRGLLQRELVRRF
GAAIGIGLASVLFGAAHLPAGAGFAGLATLAGLGYGLAFHYAGDRLWVAVLLHGAVNSLH
ILLLTYPLR