Protein Info for PGA1_c13080 in Phaeobacter inhibens DSM 17395

Annotation: transcriptional regulator, GntR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF00392: GntR" amino acids 13 to 76 (64 residues), 56 bits, see alignment E=2.5e-19 PF07702: UTRA" amino acids 100 to 228 (129 residues), 70 bits, see alignment E=1.9e-23

Best Hits

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 73% identity to sit:TM1040_3363)

Predicted SEED Role

"Transcriptional regulator, GntR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DZV8 at UniProt or InterPro

Protein Sequence (236 amino acids)

>PGA1_c13080 transcriptional regulator, GntR family (Phaeobacter inhibens DSM 17395)
MPTPRTSGTALPLYLQISEALTREIAAGRLADGERLAPERRLAQTYGTTVRTLRKALSEL
EKQGMLERIQGSGNYIRTTQTLPSVYSMFRLELPNGGGLPTADVLSVTECDKPADLPQFG
TSAQATRIRRLRYLDSTIIAVEEIWLDAGAGRVDVTQLSDSLYRYYRLQLGFWISRAEDR
VSLAPVPDWAPALFTKPPGTTVGYIERLSWAQDLAPVEFSRTWFDTEKALYVQRLT