Protein Info for Psest_1321 in Pseudomonas stutzeri RCH2

Annotation: undecaprenyl-diphosphatase UppP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 40 to 59 (20 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 187 to 209 (23 residues), see Phobius details amino acids 219 to 241 (23 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details TIGR00753: undecaprenyl-diphosphatase UppP" amino acids 7 to 260 (254 residues), 258 bits, see alignment E=5.5e-81 PF02673: BacA" amino acids 7 to 262 (256 residues), 294.9 bits, see alignment E=3e-92

Best Hits

Swiss-Prot: 96% identical to UPPP2_PSEU5: Undecaprenyl-diphosphatase 2 (uppP2) from Pseudomonas stutzeri (strain A1501)

KEGG orthology group: K06153, undecaprenyl-diphosphatase [EC: 3.6.1.27] (inferred from 96% identity to psa:PST_2975)

Predicted SEED Role

"Undecaprenyl-diphosphatase (EC 3.6.1.27)" (EC 3.6.1.27)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.27

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKM8 at UniProt or InterPro

Protein Sequence (270 amino acids)

>Psest_1321 undecaprenyl-diphosphatase UppP (Pseudomonas stutzeri RCH2)
MDLLQIIVLAIVQGLTEFLPVSSSAHLILFPHLAGWEDQGLAFDVAVHLGTLFAVVWYFR
QEVFGMTRDWFASLAKRERVGDSRLAWAVILGTIPAGIAGLLFKGFIEEQMRSPLVIAWA
TIGFGLLLWWSDVVSRKTPQPRDEHSLSWKDILLIGCAQALALIPGTSRSGVTMTAGLLL
GLSRSGAARFSFLLSIPIIVLASALSMLDLAEGGVAVDWTAMGLGVVLSAVSAYLCIHFF
LKLLERVGMLPFVIYRLILGVVLLVLFSGA