Protein Info for Psest_0127 in Pseudomonas stutzeri RCH2

Annotation: type VI secretion protein, VC_A0110 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 PF05947: T6SS_TssF" amino acids 3 to 593 (591 residues), 476.8 bits, see alignment E=5.7e-147 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 3 to 596 (594 residues), 617.6 bits, see alignment E=1.6e-189

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 87% identity to pmy:Pmen_0095)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GH37 at UniProt or InterPro

Protein Sequence (596 amino acids)

>Psest_0127 type VI secretion protein, VC_A0110 family (Pseudomonas stutzeri RCH2)
MSFNHYYQSELTALRQLGKRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLD
DELPELTHSLMHLLWPNYMRPLPAFSMLQFDTLKRPGPALTVPRNTPVESNPVQGVSCCF
RTAYATEVLPLALQALEYSVKGTGALLSLRLQMSADGHLGEIGLSHLRLHLAGEPYISQL
LYLSLLRHLGGIELVPLNEQGKPLTGSDGRPLTPLQLNAKQVEPVGFAEDEALIPYPLNT
FRGYRYLQEYFAFPDKFLFVDLKGLEVIQRIPEDLLKQARGLELRFDIHKAGVQRIRPTL
DNVRLYCTPVVNLFPHDAIPIRLDGKQDQYLLLPAEYDTQQCGVFSVDRVTGWKPGGMGY
EEYVPFESFEHDASFDVPVARPHYSVRQQPSLLGEGQETWLSFGLRNLDQHETLSIELTC
TNQNLPRQLKLGDICKPSEDTPEFLSFRNISAVTPSYAPPLQRDYLWKLISNMSLNYLSL
ANVEALKVILETYDLPRYYDKHAENVSRRRLGGLTHIAHQHVDRLHRGLPVRGVRTELTM
NQDGFIGEGDLFLFASVLNEFFALYASLNSYHELRVQSTQGEVYQWTPRMGQQPLL