Protein Info for PGA1_c12750 in Phaeobacter inhibens DSM 17395

Annotation: Predicted transporter component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 52 to 69 (18 residues), see Phobius details amino acids 81 to 98 (18 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details PF04143: Sulf_transp" amino acids 84 to 128 (45 residues), 34.9 bits, see alignment E=6.7e-13

Best Hits

Swiss-Prot: 42% identical to Y766_XYLFA: UPF0394 membrane protein XF_0766 (XF_0766) from Xylella fastidiosa (strain 9a5c)

KEGG orthology group: K07112, (no description) (inferred from 72% identity to sil:SPO1029)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EW32 at UniProt or InterPro

Protein Sequence (142 amino acids)

>PGA1_c12750 Predicted transporter component (Phaeobacter inhibens DSM 17395)
MNIDWIWGLIGGALIGTGGAVYLLGNGRIMGASGILGGLIDGSGRNSAAERLAFIAGVVL
IPLVMWLTIAEVPDTHLTPNTAVIVAAGLLVGLGTRIANGCTSGHGVCGISRLSLRGLIA
TVIYILAGALTLALFRHVWSLI