Protein Info for Psest_1290 in Pseudomonas stutzeri RCH2

Annotation: ABC-type spermidine/putrescine transport systems, ATPase components

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF00005: ABC_tran" amino acids 24 to 165 (142 residues), 121 bits, see alignment E=8.8e-39 PF13304: AAA_21" amino acids 121 to 198 (78 residues), 31.8 bits, see alignment E=2.2e-11 PF08402: TOBE_2" amino acids 277 to 346 (70 residues), 41.7 bits, see alignment E=1.6e-14

Best Hits

KEGG orthology group: K02010, iron(III) transport system ATP-binding protein [EC: 3.6.3.30] (inferred from 96% identity to psa:PST_3004)

Predicted SEED Role

"Ferric iron ABC transporter, ATP-binding protein" in subsystem Iron acquisition in Vibrio or Transport of Iron

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGH5 at UniProt or InterPro

Protein Sequence (365 amino acids)

>Psest_1290 ABC-type spermidine/putrescine transport systems, ATPase components (Pseudomonas stutzeri RCH2)
MKTEPPLLQLRDLACGYGEQSIVQHLNLHLNRGDIGCLLGPSGCGKTTTLRAIAGFEPVH
QGEIQLADAVISRAGLTLAPEKRRIGMVFQDYALFPHLTVAENIAFGIRRQPDCSRIVSE
MLELVHLSALGKRYPHELSGGQQQRVALARALAPEPALLLLDEPFSNLDVELRRRLSHEV
REILKARNTSAILVTHDQEEAFAVSDQVGVFKDGRLEQWDTPFNLYHEPLTPFVASFIGQ
GYFIRGQLLDPETVQTELGMIRGNRAYTWPAGSSVDVLLRPDDIVYRPDSPLRALIVGKT
FLGASTLYRLQLPTGNQLVAIFTSHADYPTGQEVGIAIAADHLVVFPAQGSVAAHETLQP
TTAAR