Protein Info for PGA1_c12730 in Phaeobacter inhibens DSM 17395

Annotation: TIGR01244 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 PF04273: BLH_phosphatase" amino acids 2 to 109 (108 residues), 107.1 bits, see alignment E=3.1e-35 TIGR01244: TIGR01244 family protein" amino acids 4 to 135 (132 residues), 139 bits, see alignment E=4.9e-45

Best Hits

KEGG orthology group: None (inferred from 77% identity to sit:TM1040_1505)

Predicted SEED Role

"FAD-dependent pyridine nucleotide-disulphide oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EYK0 at UniProt or InterPro

Protein Sequence (149 amino acids)

>PGA1_c12730 TIGR01244 family protein (Phaeobacter inhibens DSM 17395)
MDPRTLTPRYSVSPQISVEDLPQLAAAGFITVICNRPDTEVPPSHQADAIRAAAEAQGLR
FEVLPLTHQTMTPENVAKQQAFVEASEGPVLAYCASGTRCSVVWALGQAPLLPVDEILAT
TAEAGYQLDGLRPTLIAVATQATQTANEN