Protein Info for HP15_1218 in Marinobacter adhaerens HP15

Annotation: OmpA/MotB domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF18393: MotY_N" amino acids 31 to 175 (145 residues), 145.3 bits, see alignment E=1.5e-46 PF00691: OmpA" amino acids 188 to 281 (94 residues), 71.1 bits, see alignment E=8.4e-24

Best Hits

KEGG orthology group: None (inferred from 69% identity to maq:Maqu_2504)

Predicted SEED Role

"Type I secretion system, outer membrane component LapE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PHL7 at UniProt or InterPro

Protein Sequence (305 amino acids)

>HP15_1218 OmpA/MotB domain protein (Marinobacter adhaerens HP15)
MGFRPGQLLNTLLVATLPVALLPATAQAASYGAGIENSQWYLAESVFECRLVHEVPGYGR
AVFNHRAGESLSFFLESDSALMRPGRGSLVVEAPAWRPGVAPKPLGTVNVSDDRRQVSLD
TRQAFVVAHGLLDGMRPTVTRESWFDGRPVRVQVSNINFAGEYQRYQRCTSNLLPVNFDQ
IQRSRVPFASGSTQLSDADRQLLDNIVAYVNADSTVERIFVDGHSDSIGSRIDNRALSED
RANVVADYLKASGIDENMITVRAHGDQYPVSNRPADNRRTNIRLQRAGDRPELQQANGYG
GEPRG