Protein Info for Psest_0123 in Pseudomonas stutzeri RCH2

Annotation: Rhs element Vgr protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 699 transmembrane" amino acids 638 to 657 (20 residues), see Phobius details TIGR03361: type VI secretion system Vgr family protein" amino acids 10 to 524 (515 residues), 691.5 bits, see alignment E=6.8e-212 TIGR01646: Rhs element Vgr protein" amino acids 22 to 506 (485 residues), 416.8 bits, see alignment E=1.4e-128 PF05954: Phage_GPD" amino acids 29 to 323 (295 residues), 286.5 bits, see alignment E=3.6e-89 PF04717: Phage_base_V" amino acids 386 to 455 (70 residues), 51.9 bits, see alignment E=1.2e-17 PF22178: Gp5_trimer_C" amino acids 473 to 577 (105 residues), 116.8 bits, see alignment E=8.2e-38

Best Hits

KEGG orthology group: None (inferred from 72% identity to pmy:Pmen_0820)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GFD4 at UniProt or InterPro

Protein Sequence (699 amino acids)

>Psest_0123 Rhs element Vgr protein (Pseudomonas stutzeri RCH2)
MFNPANQAHFTLSLEGVEHDFKVLEFQGREAISQPYRFDLELVSERSDLDLESLLHRPAF
LALAPDGSGIHGLVHQAAQGESGQRLTRYRLTLVPQLAYLAHRTNQRIFQHLTVPQIIAQ
VLEEHGIQADAYRFQLGPVIYPPREYCVQYDESDLHFIQRLCEEEGIHYHFQHSAAGHAL
VFGDDQTVFPRLAATAYQQDSGLVADQPVIKRFGLRLETRTSRVTRRDYDFEKPRLTMEA
SFHSDFQPDLEDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPRLASGHFLPL
GEHPRSDWNQLWLLTEVLHEGKQPQVLEESVTSHVDTGDGFIQGYRNHFIATPWDIPFRP
ALKHPKPKVLGSQTAVVTGPVGEEIHCDEYGRVRVQFHWDREGQADDKTSCWLRVSSSWA
GGRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKDHQVPYDLPANKTRTVFKTLSSP
GGGGYNELRIEDRKGAEQIYLHAQRDWDENIEHDQKIRVGHERHDTVEANSYSEFKAEEH
RTTHADRKTEIRANDHLTVGNSQHLKIGTGQFIEAGNEIHYYAGSKVVIDAGMELTASGG
GSFLKLDPSGVTLSGATIRMNSGGAAGKGSGLKILAPVLPWLATSAVAGSLTLPALINMS
RQLKQAAAAKLLLVKQCGMQADGSCQLEVCPCGKNASTV