Protein Info for Psest_0121 in Pseudomonas stutzeri RCH2

Annotation: LysM domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 341 to 357 (17 residues), see Phobius details amino acids 366 to 394 (29 residues), see Phobius details PF01476: LysM" amino acids 3 to 47 (45 residues), 52 bits, see alignment 2.8e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHE1 at UniProt or InterPro

Protein Sequence (415 amino acids)

>Psest_0121 LysM domain. (Pseudomonas stutzeri RCH2)
MEYTIQRGDTLTRIASDHGTTVSSLLRLNPQIEDPNQIQAGQMLRMPATSSPARPGCTAG
QIMQDSQCSGAAFDVAFYWNEEVQSRQAIYEAIYGREMHFLHRSLFQRNNEHLNETVLPG
EIVIISNMPRTDADRQRLEALRAQARLASEGIQQLTPAEAMTVKRHLEVLDYVSLETVAS
HQSTALGVLSAAAGRQLGNVRSTLEKINVAYVDELSRTGNPNRFSPEFYAKRQQLFGQLN
HSLGRLTLSTINIRNYDSIKTTLGLSTKSILHNASAITERGEVPQLGQRINTVSNWAKGA
SRLGYLGIAIDGGVRLNAIQEACTVGNDQVCTQTSFKQVTGFFGSAGGGAVGGFAGAKVA
TAVVGGIALAFGVTIGAPVLAVIAIAGAAAGAYYGGSEGGSFGEEVGTIIYRGIY