Protein Info for Psest_1237 in Pseudomonas stutzeri RCH2

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 271 to 290 (20 residues), see Phobius details amino acids 302 to 319 (18 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details TIGR04408: LPS export ABC transporter permease LptG" amino acids 4 to 351 (348 residues), 435.8 bits, see alignment E=4.3e-135 PF03739: LptF_LptG" amino acids 6 to 351 (346 residues), 265.2 bits, see alignment E=4.5e-83

Best Hits

KEGG orthology group: K11720, lipopolysaccharide export system permease protein (inferred from 96% identity to psa:PST_3056)

Predicted SEED Role

"FIG000906: Predicted Permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIG0 at UniProt or InterPro

Protein Sequence (353 amino acids)

>Psest_1237 Predicted permeases (Pseudomonas stutzeri RCH2)
MVKLDRYIGIHVFLAILTVLGIIVGLALLFAFIDELGDVQGGYGLGDALQYVLLTSPRRL
YEMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVMAVMKPMLVLLVAGILIGEYV
APATEDIAQARRSLAQGAGEAQSSKRGLWHRQENEFVHVNAVQPGGVLVGVTRYRFDDER
RLQASSFARRATYQGDHWKLENISTTHFRGDHTEVLRAPEERWDVQLTPQLLGTVVMEPE
ALSITGLWRYIHYLGEQGLNNGRYWLAFWTKVLQPAVTVALVLLAISFIFGPLRSVTLGQ
RIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPASVCALIGAWLLRRAG