Protein Info for Psest_1228 in Pseudomonas stutzeri RCH2

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 47 to 66 (20 residues), see Phobius details amino acids 78 to 95 (18 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 167 to 182 (16 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 246 to 266 (21 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 300 to 319 (20 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 321 (305 residues), 71 bits, see alignment E=8.8e-24 PF06779: MFS_4" amino acids 20 to 379 (360 residues), 189.1 bits, see alignment E=1.6e-59

Best Hits

KEGG orthology group: None (inferred from 95% identity to psa:PST_3065)

Predicted SEED Role

"FIG00784450: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJ24 at UniProt or InterPro

Protein Sequence (389 amino acids)

>Psest_1228 Arabinose efflux permease (Pseudomonas stutzeri RCH2)
MPQRVALFPVLLAGAVLLLVVHGLGRFVYTPLLPWLVEDGLLSVQEGASIASWNYLGYLI
GALLAVRWHRVAQIRRTLPWALGLHVLSSLLQTQAESADALAALRLANGISNGLVFVQAP
SLILEWLARQQRVSSSGLVYLGVCVGLILSSLLVSLSDGYLLGAERWWPAALLSIPLAWW
GWRQLSRLDVPDEEKAHPSAEPPSGKLLDRSSTPLFLSYAGAGMGYILPMTFLPMVARLQ
VEPGDFLIGGSWLVVALATLPSPWLWNRLGVRMGDDIALRLSYLTQLLGVLAALLLPGAV
GILLCAVLVGGTFLGTVLLTQRLARTLHPHQGPRLSAALIALYGLTQLAAPWLTSIWMGM
GGSLHSAFWLGAGALLWGLFWMLMVPRRR