Protein Info for PGA1_c12000 in Phaeobacter inhibens DSM 17395

Annotation: Sulfotransferase family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 PF03567: Sulfotransfer_2" amino acids 4 to 157 (154 residues), 26 bits, see alignment E=4.8e-10

Best Hits

KEGG orthology group: None (inferred from 64% identity to sit:TM1040_1564)

Predicted SEED Role

"Type II secretory pathway, pullulanase PulA and related glycosidases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EL23 at UniProt or InterPro

Protein Sequence (221 amino acids)

>PGA1_c12000 Sulfotransferase family. (Phaeobacter inhibens DSM 17395)
MILSPGRSYVFVHIPKTGGTALSLALEARAMADDLMLGDTPKASKRRRRLRGVKTRGRLW
KHSTLADIDGLVPEAQLCGLFAFTLVRNPFDRVLSLYHWLREQSFNHPSVPLAKALGFAD
FACHPEILAAFRSNPARAYMRRADGVEQCACYIRLEHFAKDAAPLFEHLGFELHLPVANA
SDRPRGWQAAYTDAARRAVAEACAEDLAQFEYSFNDSPIDQ