Protein Info for Psest_1190 in Pseudomonas stutzeri RCH2

Annotation: Transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 PF00440: TetR_N" amino acids 27 to 73 (47 residues), 60.4 bits, see alignment 1.1e-20 PF08362: TetR_C_3" amino acids 74 to 214 (141 residues), 195 bits, see alignment E=6.3e-62

Best Hits

KEGG orthology group: K09017, TetR/AcrR family transcriptional regulator (inferred from 93% identity to psa:PST_3101)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKB0 at UniProt or InterPro

Protein Sequence (222 amino acids)

>Psest_1190 Transcriptional regulator (Pseudomonas stutzeri RCH2)
MRTLVRIAGSQRKAPMSSIRERNKELILKAASEEFAEKGFAASKTSDIAARAGLPKPNVY
YYFKSKENLYREVLESIVEPLLEASAPFNQPGHPAEVLRAYIRTKIRISRDHACASKVFA
SEIMHGAPHLSPERTAQLNAQAAHNIACIQRWIDDGLMADIDANHLLFSIWAATQTYADF
DWQISTVTGKTRLDDADYDAAADTIIRLVLKGCEIADPLHSV