Protein Info for Psest_1183 in Pseudomonas stutzeri RCH2

Annotation: hydroxyisourate hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR02962: hydroxyisourate hydrolase" amino acids 25 to 135 (111 residues), 134.7 bits, see alignment E=8.9e-44 PF00576: Transthyretin" amino acids 27 to 135 (109 residues), 126.9 bits, see alignment E=2.6e-41

Best Hits

Swiss-Prot: 52% identical to HIUH_SALDU: 5-hydroxyisourate hydrolase (hiuH) from Salmonella dublin

KEGG orthology group: K07127, 5-hydroxyisourate hydrolase [EC: 3.5.2.17] (inferred from 93% identity to psa:PST_3112)

MetaCyc: 52% identical to hydroxyisourate hydrolase / transthyretin-related protein (Escherichia coli K-12 substr. MG1655)
Hydroxyisourate hydrolase. [EC: 3.5.2.17]

Predicted SEED Role

"Transthyretin family protein"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.5.2.17

Use Curated BLAST to search for 3.5.2.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIY6 at UniProt or InterPro

Protein Sequence (136 amino acids)

>Psest_1183 hydroxyisourate hydrolase (Pseudomonas stutzeri RCH2)
MKALRSIAAGLMLSGLSGLSLAAGNPLSVHVLNLQDGLPSPDVRVTLEQRQGDSWKSLNS
GETNAQGRITALYPEGKALEKGTYRVTFKTGDWFAAHKASTFFPEVPVIFEADGSVEHYH
IPLLLSPYGFSTYRGN