Protein Info for Psest_1176 in Pseudomonas stutzeri RCH2

Annotation: Urea transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 39 to 60 (22 residues), see Phobius details amino acids 69 to 86 (18 residues), see Phobius details amino acids 92 to 110 (19 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 157 to 183 (27 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 234 to 275 (42 residues), see Phobius details PF03253: UT" amino acids 10 to 273 (264 residues), 157.8 bits, see alignment E=1.8e-50

Best Hits

KEGG orthology group: K08717, urea transporter (inferred from 64% identity to psa:PST_3119)

Predicted SEED Role

"Eukaryotic-type low-affinity urea transporter" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GK10 at UniProt or InterPro

Protein Sequence (282 amino acids)

>Psest_1176 Urea transporter (Pseudomonas stutzeri RCH2)
MRVPVALHPLLHAFAQVFLQRHAGCGALIMLALAVADPALLAGSLFAVVMAHSGAIWLGY
SADDREDGLYGYNAVLLGALLVHLFGLSTVSLAMIATASLASCPLQAWLLGRLRQHGGLP
GFTLPFVLIGFVTLLAATPAPVPATTDLPPDTSALLGAWLLGVAQVIFVDDRLAAASLVL
AVAVANWRDALWLLAGSALGMVVGGWIGAAWSDGQAGFNPALAALALAQWRDGWSLPVLG
MLAAIALWLALHSLGLPTLTLPFLLATWLGLLIRLPHRSHNR