Protein Info for PGA1_c11370 in Phaeobacter inhibens DSM 17395

Annotation: putative integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 140 to 157 (18 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 199 to 220 (22 residues), see Phobius details amino acids 227 to 250 (24 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details PF00892: EamA" amino acids 10 to 155 (146 residues), 63.9 bits, see alignment E=9.7e-22 amino acids 166 to 301 (136 residues), 61.2 bits, see alignment E=6.7e-21

Best Hits

Predicted SEED Role

"Drug/metabolite exporter family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DP79 at UniProt or InterPro

Protein Sequence (303 amino acids)

>PGA1_c11370 putative integral membrane protein (Phaeobacter inhibens DSM 17395)
MSEKRTMDGIGAAMLIGFSGLMGFNQVVIKVSNGGFGPVFQAGLRSLIGLAVLLAWLAFR
GQMKRASNPAPAPTPTHWTRSVHLWGLVSGLLFTAEFVCLYIALDLSSVSRVTIIFNSMP
VWLALAGHLLLPGERLNSMRMLGLVLAMGGVVLAVLHRGSGDASLLGDVLALAATLAWAG
IALCARLSPLAHVPPIRQLTYQLATSALVLLAISPLFGPLLRAPTALHISGVVFQAVAIA
SLGYLLWLWLISIYRANAVASFSFLSPVIAAILGWLLLDEIIYPQVWAALALVAVGIVLI
NRK