Protein Info for PGA1_c10860 in Phaeobacter inhibens DSM 17395

Annotation: putative ABC transporter, ATP binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF00005: ABC_tran" amino acids 17 to 165 (149 residues), 103.1 bits, see alignment E=9.6e-34

Best Hits

KEGG orthology group: K02065, putative ABC transport system ATP-binding protein (inferred from 88% identity to sil:SPO2672)

Predicted SEED Role

"Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1)" in subsystem Arginine and Ornithine Degradation (TC 3.A.1.3.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DP45 at UniProt or InterPro

Protein Sequence (248 amino acids)

>PGA1_c10860 putative ABC transporter, ATP binding protein (Phaeobacter inhibens DSM 17395)
MIQMKDVHKAFGDNKVLQGMTLEIPKSSSMVIIGGSGTGKSVALKSVLGLITPDQGQILV
DGKPAASGDRDAFLARFGMLFQGAALFDSLPVWQNVAFRLLRGSLKRPVDEAREIAIEKL
RRVGLKADVADRLPAELSGGMQKRVGLARAIAAEPEIIFFDEPTTGLDPIMSGVINDLIR
EIVVEMGATAMTITHDMTSVRAIADNVAMLHAGVIQWTGPVSEMDQSGDPYMEQFIHGRA
EGPIEAVR