Protein Info for Psest_0107 in Pseudomonas stutzeri RCH2

Annotation: malonate decarboxylase holo-[acyl-carrier-protein] synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 TIGR03135: malonate decarboxylase holo-[acyl-carrier-protein] synthase" amino acids 6 to 197 (192 residues), 188.3 bits, see alignment E=7.4e-60 PF20866: MdcG_N" amino acids 6 to 77 (72 residues), 63.6 bits, see alignment E=1.5e-21 PF10620: MdcG" amino acids 81 to 198 (118 residues), 135.4 bits, see alignment E=9.9e-44

Best Hits

Swiss-Prot: 55% identical to MDCG_PSEPF: Phosphoribosyl-dephospho-CoA transferase (mdcG) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K13934, phosphoribosyl-dephospho-CoA transferase [EC: 2.7.7.66] (inferred from 87% identity to psa:PST_4115)

Predicted SEED Role

"Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)" in subsystem Malonate decarboxylase (EC 2.7.7.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.-

Use Curated BLAST to search for 2.7.7.- or 2.7.7.66

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GH15 at UniProt or InterPro

Protein Sequence (205 amino acids)

>Psest_0107 malonate decarboxylase holo-[acyl-carrier-protein] synthase (Pseudomonas stutzeri RCH2)
MHDTPRPHDLLWGMPSEQLPADAPAWAVAVLAAGQPVVVRRARVAAGLVAVGLRGATRDQ
RLAALMPIEAISHRLAPEALLARQASEDLPVFRVLAEIRPLLDALGYVWGVTGSAGFQLA
TGLPTAHPDSDLDLLLRTEHPLPRSEARPLLQLLERRACRVDLQLETPLGGVALSEWASG
AARVMVKTADGPRLVGDPWHAERAA