Protein Info for Psest_1102 in Pseudomonas stutzeri RCH2

Annotation: Integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 PF13356: Arm-DNA-bind_3" amino acids 6 to 90 (85 residues), 92.9 bits, see alignment E=2.2e-30 PF14659: Phage_int_SAM_3" amino acids 110 to 159 (50 residues), 32 bits, see alignment 2.3e-11 PF22022: Phage_int_M" amino acids 110 to 203 (94 residues), 40.3 bits, see alignment E=6e-14 PF00589: Phage_integrase" amino acids 216 to 376 (161 residues), 61.8 bits, see alignment E=1.5e-20

Best Hits

KEGG orthology group: None (inferred from 96% identity to psa:PST_3193)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GG02 at UniProt or InterPro

Protein Sequence (403 amino acids)

>Psest_1102 Integrase (Pseudomonas stutzeri RCH2)
MPENLLTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFP
QVSLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAE
IKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDL
SAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALC
LRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRI
TGGGRYLFPHRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIER
QLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAAEHSDTE