Protein Info for EX31_RS20665 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 16 to 33 (18 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 314 to 333 (20 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details amino acids 403 to 421 (19 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 360 (337 residues), 143.3 bits, see alignment E=9.4e-46 amino acids 250 to 432 (183 residues), 55 bits, see alignment E=6.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_1011)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>EX31_RS20665 MFS transporter (Rahnella sp. WP5)
MNGHENKAVRSANRKFFARTIPMLILMLIINQIDRTNVGFIKHSLETDVGISTAAFGFGA
GLFFVGYALFEIPSNMLMDKYGARVWLTRIMITWGAVVFAMGFVTTPMQFYVLRFLLGVA
EAGFFPGILFYFRKWVPNVYRGRATALILTGSAAAYLLSGPVTGGLLELHDFMGLPGWQW
VLFIEGALSVLVGIVAAFFLVSKPEEAKWLTAEEKLALSNALSTESSSRDLHTQGQSRWK
LITDGKMAYLCFLFFVMCMTGYTLVFWQPEIIGRIQGLSPFQIGMLNSVPWICAIIAINI
LGRVSDRFRGSRETILALALIVAAIGTCLCTVGSPWFGLFALCVVCIGTKSSAVLFWPIP
QSQLPSSIVAPGIALINSLGNLGGFFAPAVFGYLQQTTGSTTAGLYILSGISVFAAITLF
FTKTHRTPTQPEYHAPQGMEPKRHV