Protein Info for EX31_RS18670 in Rahnella sp. WP5

Annotation: outer membrane permeability protein SanA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02698: DUF218" amino acids 47 to 173 (127 residues), 70.3 bits, see alignment E=7.6e-24

Best Hits

KEGG orthology group: K03748, SanA protein (inferred from 100% identity to rah:Rahaq_1421)

Predicted SEED Role

"SanA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>EX31_RS18670 outer membrane permeability protein SanA (Rahnella sp. WP5)
MIKRLIAGVFGIIILMLAVAIGLDQWISLRTQPYIYDEVQTLPHRQVGVVLGTAKYYRTG
VINQYYLYRIQGAINAYNSGKVKYLLLSGDNAQQSYNEPSTMRRDLIAAGIPASDIVLDY
AGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCFAVPSPKNMLSVRS
REIFARLGALTDLYLLKREPRFLGPLIPIPAVHTIPDDAQGYPAVTPEQLLALQQQLEAE
KKAAIAKAAADKAAADKAAAEKAAADEAARVKAEQEANDAAQAETEDAAPAPQPEPPKPV
GRNPFQQ