Protein Info for EX31_RS12690 in Rahnella sp. WP5

Annotation: YgjV family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 58 (23 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 97 to 114 (18 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details PF10688: Imp-YgjV" amino acids 5 to 161 (157 residues), 189.1 bits, see alignment E=2.4e-60

Best Hits

Swiss-Prot: 66% identical to YGJV_ECOLI: Inner membrane protein YgjV (ygjV) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_3921)

Predicted SEED Role

"Inner membrane protein ygjV"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (184 amino acids)

>EX31_RS12690 YgjV family protein (Rahnella sp. WP5)
MTYYWFAQSVGVVAFMVGITMFFNRSDRRFKQQLSAYSAIIGVHFLMMGAAPAGMSALLN
SLRTLISLRTRNQLIMVIFIVLTLVLGLSRAHHWMELLPVGATVVSTWALFRTSGLTTRC
IMWCSTCCWVAHNIWLGSIGGSLIEGSFLVMNGFNIIRFRRLQLRGIDPFEVEKKLVQKM
DEQG