Protein Info for EX31_RS12285 in Rahnella sp. WP5

Annotation: p-hydroxybenzoic acid efflux pump subunit AaeB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 54 (19 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 149 to 166 (18 residues), see Phobius details amino acids 300 to 315 (16 residues), see Phobius details amino acids 369 to 393 (25 residues), see Phobius details amino acids 405 to 424 (20 residues), see Phobius details amino acids 430 to 447 (18 residues), see Phobius details amino acids 454 to 475 (22 residues), see Phobius details amino acids 484 to 501 (18 residues), see Phobius details PF04632: FUSC" amino acids 8 to 650 (643 residues), 463.6 bits, see alignment E=1.3e-142 PF13515: FUSC_2" amino acids 22 to 160 (139 residues), 51.2 bits, see alignment E=1.4e-17

Best Hits

Swiss-Prot: 100% identical to AAEB_RAHSY: p-hydroxybenzoic acid efflux pump subunit AaeB (aaeB) from Rahnella sp. (strain Y9602)

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4004)

MetaCyc: 59% identical to aromatic carboxylic acid efflux pump subunit AaeB (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-233

Predicted SEED Role

"FUSARIC ACID RESISTANCE PROTEIN FUSB / FUSARIC ACID RESISTANCE PROTEIN FUSC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (652 amino acids)

>EX31_RS12285 p-hydroxybenzoic acid efflux pump subunit AaeB (Rahnella sp. WP5)
MNSVLIPRVRFACKLTFAILGALVLGFYLQLETPRWSAMTAAIVTSGPALAAGGEPFAGA
IRHRGFLRVIGTFIGCIAALVIVIATARAPVVMLLLCCIWAGVCTWWSSLVRIENSYALG
LAGYTALIIVVTSASSPLQTPQFAVERCSEIVIGICCAIVADLLFSPRSIKKDIDRAVSQ
LMLDQFALMRICVNSGTKEEIDKSWNNLVKSTTALNGMRGSLMMESSRWQRCNRRLKALH
STSLSMITQACETYLIMQSSPERVSPELKALFAEPAENVADVHRRLKQLRQMITGMHSDN
VLMTVSAWTGAGTRALLLMKGIQTNSSISAIESGVLDGEVVVRPVSAERHHALVNGLRTF
TATTIGCLMWLWTGWTSASGCVIIIAVVTSLAMRTPNPKGMAMDFIIGMLLAIPVGSMMF
MLIMPATQQSLFLLCLMLGIFTFFIGIEVTKRRLGMLGLLAGTINILVLSNPMVFNVTSF
LDNAMGQAIGTVIAMAVLLIVRDKSREKTGRTLLNRFMSSAVSALTTKAYRRRENHLPAL
YHQLNQLLVMFPNDIGKYRLALMLIIAHQRMKLAEVPVNDELSAFHKKIRNTADHVVSAS
GEGKRTYYYQRLLKELGEYQEKLVEYDAPLKVTEPVRRLTDMLQRYQHAFLA