Protein Info for EX31_RS01010 in Rahnella sp. WP5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1145 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 54 (19 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details PF14331: IcmF-related_N" amino acids 184 to 349 (166 residues), 107.3 bits, see alignment E=4.2e-35

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 99% identity to rah:Rahaq_4930)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1145 amino acids)

>EX31_RS01010 hypothetical protein (Rahnella sp. WP5)
MFKKLLSFVAWTLFLCLLLIVCVVMSVVFEQTLLHALILWLILIIAVLFSRFVWGSVSGM
AQAKYLSSLKARFKLTRLEYVLFEHWKTGAAVIKRIRRRKQPIPWFILTGGRSGKTTLMA
GAGLPLFSNEPESSLVVPTRTLRWWFFRSAGFLDLSSHFLNKTPAFERGWLRLVNWCARL
PAPGGIVVCVSVSELLEKDDAELHLHARHIRTQIEPLVSKVKRRLPVYLFITCCDRVPGF
SHWANNLSAEQRQQPLGYYWRRSPVVDGKDPALLDPLFTCVKDGLDKVRVSMLSGGEPDG
DTLALMDFPEQLPKLQPALQRYLAALCEPDAYFQPAALGGIWFTATEPVSKNSASRQAFF
IHDLMARLLPELSRQREIEPVGFGRRYLHKWGAMTFSVLAITYVLVSGYFTNRLTGGSPA
KMDVTAQVQQLESIEHWNAHPLKYLPFVPVLNHRHTQLEASILAASPRDKVNLREIADNY
QQLFTDADPQQKRELILNLASTLITKQAMWEKQPVSELIKQAPVPAALSMTGATVSLPYQ
QDVVLQRALLQLPEGGKQLVVLRELLGRLVNSDPQMAWLVAPSGDLTPVNLTDFMPSSED
KTQVSGLWTLQGTAQIQGWLKEIRRAGGEQVPMPALVAFEQHWPALRQTQWMTMMLAMNQ
QPAPELTSEEWQTALITLDQGNSPSMKFSRYVNEQLEDIRAQDAEPWLRELRRLNQLQAM
SVPGALIPRISKVQQSFQKKISALLKIDSKTLTPVLSDLNVKNWNAWKNSLHAAVSDVFA
TPKSSDRLTRGLFQTGAAGDSNPLQLLDSRFNVLRKSLSAERDDFATNAVWALYQNDAHW
LVAHAMQRSACWLEQQWQSRVLWPMENNASRLEYDDQQDLAWQYLSDFIRGPAKSVLVVE
DNGPKAGEFNGQTPGLTPEFLRMVNHVLRPDDVLAMPERENTRNDDALAALKDEQADLEA
QMAALEAKPLELTLKSLPATIPGGARLMPVGTQLTLFCDEQQWKLNSMNFSEQAAFRWRP
GHCSRATLVIKFPGFDLTYEYFGDAAWPDFLQDISDGQHRFKAEDFPDDAAQLTALGIKE
VMVRYQSGSQNALQDRWHQWQELNQALNDNAEAQQETGLKKAEKQRPTALKSAFSQLPVR
ITGCH