Protein Info for ECOLIN_RS05865 in Escherichia coli Nissle 1917

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 18 to 23 (6 residues), see Phobius details amino acids 31 to 50 (20 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 134 to 159 (26 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 551 to 570 (20 residues), see Phobius details amino acids 659 to 677 (19 residues), see Phobius details amino acids 692 to 715 (24 residues), see Phobius details amino acids 727 to 749 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

"probable membrane protein b2001"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (850 amino acids)

>ECOLIN_RS05865 hypothetical protein (Escherichia coli Nissle 1917)
MLQIVGALILLIAGFAILRLLFRALTSTASALAGFILLCLFGPALLAGYITERITRLFHI
RWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTTALAAGLLALPVQIRTIQQ
NGLTPEDISKEINGYYCCFYTAFFLMACSAYAPLIALQFDISPSLMWWGGLLYWLAALVT
LLWAASQIQALKRLTSAISQTLEEQPVLNSKSWLSSLQNDYSLPETLTERIWLTLISQRI
SRGELREFELADGNWLLDNAWYERNMAGFNEKLRESLSFTPDELKTLFRNRLNLSPEAND
DFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICASCGLTEVHHAPENHKPDPEWYCSSLC
RETETLCQDIYERSHTGFISDATANGLILMKLPETWSTNEKMFASGGQGHGFAAERGNHI
VDRVRLKNARILGDNNARNGADRLVSGTEIQTKYCSTAVRSVGAAFDGQNGQYRYMGNHG
PMQLEVPRDQYAGAVETMKNKIREGKVPGVTDPAEASRLIRRGHLTYTQARNITRFGTIE
SVTYDIAEGSVVSLAAGGISFALTASVFWLSTGDRDAALQTAAVQAGKTFTRTLAVYVTT
QQLHRLSVVQGMLKHIDFSTASPTVRQALQKGTGAGNIRALQKGTGAGNISALNKVMKGT
LVTSLALVAVTTGPDMIKMLRGRISGAQFIRNLAVASSCVAGGAVGSVAGGILFSPLGPF
GALTGRVVGGVLGGMIASAVSGKIAGALVEEDRVKILAMIQEQMTWLAGSFLLTGHEIEN
LNANLARVIDQNALEIIFAAGIQQRAATNMLIKPLVVSIIRQRPVMEYDASHLGNMVNRL
EETLPPELPA