Protein Info for Dsui_3535 in Dechlorosoma suillum PS

Annotation: putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 50 to 76 (27 residues), see Phobius details amino acids 98 to 124 (27 residues), see Phobius details amino acids 267 to 289 (23 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details amino acids 333 to 356 (24 residues), see Phobius details TIGR04407: LPS export ABC transporter permease LptF" amino acids 2 to 348 (347 residues), 367.3 bits, see alignment E=2.9e-114 PF03739: LptF_LptG" amino acids 5 to 347 (343 residues), 176.3 bits, see alignment E=4.4e-56

Best Hits

KEGG orthology group: K07091, lipopolysaccharide export system permease protein (inferred from 63% identity to app:CAP2UW1_4126)

Predicted SEED Role

"FIG000988: Predicted permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QM16 at UniProt or InterPro

Protein Sequence (361 amino acids)

>Dsui_3535 putative permease (Dechlorosoma suillum PS)
MIFQRAVRREFTQAALGVFIALFAILLTTQLIRLLGQAAAGQVASEAVVALLGFAALNSL
PVLLSLTLFMAILLTLSRSYRDSEMVVWFASGQSLTAWVRPVLTFTLPVVVSIALLSLLI
SPWALKMSAEYRQKLTGQNRDDTAQVSPGAFKEASSSQRVVFVEAVADDSTQVRNIFVSS
MQHQKLGVMMAATGRSEQMENGDRFMVMEHGRRYEVTPGIPEFRVLEFVRYALRVDTKES
QGIEKTPKNTSTRELLKNGSPGYMAEFLWRVGVPLSALVLALLAIPMSFVNPRAGRSANM
ILALLTFTIYSNLLSVSQAWVAQGRLSFSTGWWLVHVLMAALLPLLFFRRIAVFSFLRLR
K