Protein Info for Dsui_3477 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 TIGR00229: PAS domain S-box protein" amino acids 26 to 138 (113 residues), 47.9 bits, see alignment E=7.2e-17 PF13188: PAS_8" amino acids 27 to 77 (51 residues), 31.2 bits, see alignment 3.8e-11 PF00989: PAS" amino acids 27 to 128 (102 residues), 54.7 bits, see alignment E=2.4e-18 PF08448: PAS_4" amino acids 31 to 133 (103 residues), 26.3 bits, see alignment E=1.8e-09 PF13426: PAS_9" amino acids 36 to 130 (95 residues), 33.1 bits, see alignment E=1.5e-11 PF02518: HATPase_c" amino acids 303 to 409 (107 residues), 96.4 bits, see alignment E=3.7e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QL92 at UniProt or InterPro

Protein Sequence (419 amino acids)

>Dsui_3477 PAS domain S-box (Dechlorosoma suillum PS)
MEPDHNPAGDSQQQQVLAAFARWSRTYELILHSASEGIFSLDTNGCITFANPAASRLLGW
PVEDMLTQPVAAVLYGDKPNPLAGEAEFQHRRQVFLQRDGSPIVVECNQALILEEDQTVG
AVLMFNDISERERAERALQDTLTSLEQTNRRLTQTHDQLLHAEKLAAIGQLAAGVAHEIN
TPLGYIQSNLGAMARHLEDLLTLVDAYESAAAGQQPPGRERIDLDFLRQDAPQVLAETRQ
GISRVSTVVRHLLEFSSTCASGEWRQADLEAICRTAAERACQKRHNFRLEQRYDALPPLH
CLPERLQQALENLIDNALLAIPAEGMVRLHGSCPDGRQICLTVEDNGCGIAPQHLESIFN
PFFTTRPVGSGEGMGLSVADTVARLHGGNIEVESSPGLGSRFTLHLPLQNNLPQAKAAE